HL_9BH5_085

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_085 not in the Motif Atlas

Homologous match to HL_8C3A_206

Geometric discrepancy: 0.0608

The information below is about HL_8C3A_206

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9BH5|1|B2|C|545
9BH5|1|B2|A|546
9BH5|1|B2|G|547
9BH5|1|B2|C|548
9BH5|1|B2|C|549
9BH5|1|B2|G|550

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AX

Small ribosomal subunit protein uS12

Chain DC

mRNA