HL_9BH5_090
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9BH5|1|B2|U|969
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_090 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.1269
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9BH5|1|B2|G|962
9BH5|1|B2|A|963
9BH5|1|B2|U|964
9BH5|1|B2|U|965
9BH5|1|B2|A|966
9BH5|1|B2|G|967
9BH5|1|B2|A|968
9BH5|1|B2|U|969
9BH5|1|B2|A|970
9BH5|1|B2|C|971
9BH5|1|B2|C|972
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AO
- Small ribosomal subunit protein uS11
- Chain Aa
- Small ribosomal subunit protein eS26
- Chain DA
- Transfer RNA; tRNA
- Chain DC
- mRNA
Coloring options: