HL_9BH5_096

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUUUAUUC

Length

8 nucleotides

Bulged bases

9BH5|1|B2|U|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_096 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1635

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9BH5|1|B2|G|1268
9BH5|1|B2|U|1269
9BH5|1|B2|U|1270
9BH5|1|B2|U|1271
9BH5|1|B2|A|1272
9BH5|1|B2|U|1273
9BH5|1|B2|U|1274
9BH5|1|B2|C|1275

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AR

Small ribosomal subunit protein eS17