HL_9BH5_100
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 9BH5|1|B2|A|1515
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_100 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.1172
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9BH5|1|B2|A|1506
9BH5|1|B2|U|1507
9BH5|1|B2|U|1508
9BH5|1|B2|G|1509
9BH5|1|B2|U|1510
9BH5|1|B2|A|1511
9BH5|1|B2|A|1512
9BH5|1|B2|U|1513
9BH5|1|B2|U|1514
9BH5|1|B2|A|1515
9BH5|1|B2|U|1516
9BH5|1|B2|U|1517
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AP
- Small ribosomal subunit protein uS19
- Chain AS
- Small ribosomal subunit protein uS13
- Chain AT
- Small ribosomal subunit protein eS19
- Chain Ad
- Small ribosomal subunit protein uS14
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