HL_9BH5_107
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- ACUGAAGAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_107 not in the Motif Atlas
- Homologous match to HL_7U2I_104
- Geometric discrepancy: 0.1095
- The information below is about HL_7U2I_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9BH5|1|DB|A|31
9BH5|1|DB|C|32
9BH5|1|DB|U|33
9BH5|1|DB|G|34
9BH5|1|DB|A|35
9BH5|1|DB|A|36
9BH5|1|DB|G|37
9BH5|1|DB|A|38
9BH5|1|DB|U|39
Current chains
- Chain DB
- tRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AP
- Small ribosomal subunit protein uS19
- Chain AX
- Small ribosomal subunit protein uS12
- Chain Ae
- Ubiquitin-like domain-containing protein
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain DC
- mRNA
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