HL_9BH5_110
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AUCCCGUCCGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_110 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1105
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
9BH5|1|A7|A|32
9BH5|1|A7|U|33
9BH5|1|A7|C|34
9BH5|1|A7|C|35
9BH5|1|A7|C|36
9BH5|1|A7|G|37
9BH5|1|A7|U|38
9BH5|1|A7|C|39
9BH5|1|A7|C|40
9BH5|1|A7|G|41
9BH5|1|A7|A|42
9BH5|1|A7|U|43
9BH5|1|A7|C|44
9BH5|1|A7|U|45
Current chains
- Chain A7
- 5S rRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CD
- Large ribosomal subunit protein uL18
- Chain CJ
- Large ribosomal subunit protein uL5B
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