HL_9BH5_111
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CAGCUUGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_111 not in the Motif Atlas
- Homologous match to HL_8C3A_229
- Geometric discrepancy: 0.2633
- The information below is about HL_8C3A_229
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9BH5|1|A8|C|47
9BH5|1|A8|A|48
9BH5|1|A8|G|49
9BH5|1|A8|C|50
9BH5|1|A8|U|51
9BH5|1|A8|U|52
9BH5|1|A8|G|53
9BH5|1|A8|C|54
9BH5|1|A8|U|55
9BH5|1|A8|G|56
Current chains
- Chain A8
- 5.8S rRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CX
- Large ribosomal subunit protein uL23B
- Chain Ch
- Large ribosomal subunit protein uL29
- Chain Cj
- Ribosomal protein L37
- Chain Cl
- Large ribosomal subunit protein eL39
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