HL_9BKD_018

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BKD_018 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.1092

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9BKD|1|A|A|957
9BKD|1|A|G|958
9BKD|1|A|G|959
9BKD|1|A|U|960
9BKD|1|A|G|961
9BKD|1|A|A|962
9BKD|1|A|A|963
9BKD|1|A|A|964
9BKD|1|A|U|965
9BKD|1|A|U|966

Current chains

Chain A

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S14