HL_9BKD_024
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 9BKD|1|A|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BKD_024 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.074
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BKD|1|A|G|1245
9BKD|1|A|A|1246
9BKD|1|A|C|1247
9BKD|1|A|U|1248
9BKD|1|A|C|1249
9BKD|1|A|A|1250
9BKD|1|A|A|1251
9BKD|1|A|C|1252
9BKD|1|A|A|1253
9BKD|1|A|C|1254
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain U
- Programmed cell death protein 4
- Chain Y
- 40S ribosomal protein S16
- Chain h
- 40S ribosomal protein S20
- Chain i
- 40S ribosomal protein S29
Coloring options: