HL_9BKD_025
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 9BKD|1|A|U|1300, 9BKD|1|A|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BKD_025 not in the Motif Atlas
- Homologous match to HL_8C3A_218
- Geometric discrepancy: 0.1858
- The information below is about HL_8C3A_218
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_81538.1
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9BKD|1|A|A|1295
9BKD|1|A|U|1296
9BKD|1|A|U|1297
9BKD|1|A|G|1298
9BKD|1|A|A|1299
9BKD|1|A|U|1300
9BKD|1|A|A|1301
9BKD|1|A|G|1302
9BKD|1|A|C|1303
9BKD|1|A|U|1304
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain b
- 40S ribosomal protein S15
- Chain i
- 40S ribosomal protein S29
- Chain k
- Ubiquitin-40S ribosomal protein S27a
Coloring options: