HL_9BKD_027

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9BKD|1|A|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BKD_027 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1025

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9BKD|1|A|G|1366
9BKD|1|A|U|1367
9BKD|1|A|U|1368
9BKD|1|A|A|1369
9BKD|1|A|A|1370
9BKD|1|A|U|1371
9BKD|1|A|U|1372
9BKD|1|A|C|1373

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S17