HL_9BLN_005

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9BLN|1|A|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BLN_005 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1906

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9BLN|1|A|G|288
9BLN|1|A|G|289
9BLN|1|A|U|290
9BLN|1|A|G|291
9BLN|1|A|A|292
9BLN|1|A|C|293
9BLN|1|A|U|294
9BLN|1|A|C|295

Current chains

Chain A

rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS17

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain S

Small ribosomal subunit protein eS6