HL_9BLN_013

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BLN_013 not in the Motif Atlas

Homologous match to HL_8C3A_205

Geometric discrepancy: 0.1436

The information below is about HL_8C3A_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.2

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9BLN|1|A|A|569
9BLN|1|A|C|570
9BLN|1|A|U|571
9BLN|1|A|U|572
9BLN|1|A|U|573
9BLN|1|A|A|574
9BLN|1|A|A|575
9BLN|1|A|A|576
9BLN|1|A|U|577
9BLN|1|A|C|578
9BLN|1|A|C|579
9BLN|1|A|U|580
9BLN|1|A|U|581

Current chains

Chain A

rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain T

Small ribosomal subunit protein eS24