HL_9BLN_018

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BLN_018 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.1138

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9BLN|1|A|A|957
9BLN|1|A|G|958
9BLN|1|A|G|959
9BLN|1|A|U|960
9BLN|1|A|G|961
9BLN|1|A|A|962
9BLN|1|A|A|963
9BLN|1|A|A|964
9BLN|1|A|U|965
9BLN|1|A|U|966

Current chains

Chain A

rRNA

Nearby chains

Chain P

40S ribosomal protein S14