HL_9BLN_025
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 9BLN|1|A|U|1300, 9BLN|1|A|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BLN_025 not in the Motif Atlas
- Homologous match to HL_8C3A_218
- Geometric discrepancy: 0.1872
- The information below is about HL_8C3A_218
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_81538.1
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9BLN|1|A|A|1295
9BLN|1|A|U|1296
9BLN|1|A|U|1297
9BLN|1|A|G|1298
9BLN|1|A|A|1299
9BLN|1|A|U|1300
9BLN|1|A|A|1301
9BLN|1|A|G|1302
9BLN|1|A|C|1303
9BLN|1|A|U|1304
Current chains
- Chain A
- rRNA
Nearby chains
- Chain b
- Small ribosomal subunit protein uS19
- Chain i
- Small ribosomal subunit protein uS14
- Chain k
- Ubiquitin-40S ribosomal protein S27a
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