HL_9BS0_005

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAUUCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2543

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9BS0|1|A|U|159
9BS0|1|A|G|160
9BS0|1|A|A|161
9BS0|1|A|A|162
9BS0|1|A|U|163
9BS0|1|A|U|164
9BS0|1|A|C|165
9BS0|1|A|A|166
9BS0|1|A|U|167
9BS0|1|A|A|168
9BS0|1|A|G|169

Current chains

Chain A

23S rRNA

Nearby chains