HL_9BSS_018
3D structure
- PDB id
- 9BSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 45SRbgA particle in complex with RbgA and YphC. Class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUUGUAGAA
- Length
- 10 nucleotides
- Bulged bases
- 9BSS|1|A|A|618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BSS_018 not in the Motif Atlas
- Homologous match to HL_4WF9_018
- Geometric discrepancy: 0.1633
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9BSS|1|A|U|610
9BSS|1|A|U|611
9BSS|1|A|U|612
9BSS|1|A|U|613
9BSS|1|A|G|614
9BSS|1|A|U|615
9BSS|1|A|A|616
9BSS|1|A|G|617
9BSS|1|A|A|618
9BSS|1|A|A|619
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain I
- Large ribosomal subunit protein uL15
- Chain M
- Large ribosomal subunit protein bL21
- Chain T
- Large ribosomal subunit protein bL32
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