HL_9BSS_035

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

9BSS|1|A|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BSS_035 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1616

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9BSS|1|A|A|1675
9BSS|1|A|G|1676
9BSS|1|A|A|1677
9BSS|1|A|G|1678
9BSS|1|A|A|1679
9BSS|1|A|A|1680
9BSS|1|A|U|1681

Current chains

Chain A

23S rRNA

Nearby chains