HL_9BUP_001
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 9BUP|1|AA|A|40, 9BUP|1|AA|A|43
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_001 not in the Motif Atlas
- Homologous match to HL_8P9A_113
- Geometric discrepancy: 0.073
- The information below is about HL_8P9A_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
9BUP|1|AA|U|38
9BUP|1|AA|A|39
9BUP|1|AA|A|40
9BUP|1|AA|G|41
9BUP|1|AA|C|42
9BUP|1|AA|A|43
9BUP|1|AA|U|44
9BUP|1|AA|A|45
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13
- Chain AO
- 60S ribosomal protein L27a
- Chain AP
- Ribosomal protein L15
- Chain Ai
- Large ribosomal subunit protein eL42
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