HL_9BUP_005

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGGAAUG

Length

8 nucleotides

Bulged bases

9BUP|1|AA|U|208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_005 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.3391

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

9BUP|1|AA|C|202
9BUP|1|AA|A|203
9BUP|1|AA|G|204
9BUP|1|AA|G|205
9BUP|1|AA|A|206
9BUP|1|AA|A|207
9BUP|1|AA|U|208
9BUP|1|AA|G|209

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A8

60S ribosomal protein L32

Chain AF

60S ribosomal protein L4

Chain AZ

60S ribosomal protein L26