HL_9BUP_008
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUGAGAUUG
- Length
- 10 nucleotides
- Bulged bases
- 9BUP|1|AA|G|290, 9BUP|1|AA|A|291
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_008 not in the Motif Atlas
- Homologous match to HL_8P9A_120
- Geometric discrepancy: 0.2904
- The information below is about HL_8P9A_120
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_63894.2
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
9BUP|1|AA|U|285
9BUP|1|AA|U|286
9BUP|1|AA|U|287
9BUP|1|AA|G|288
9BUP|1|AA|A|289
9BUP|1|AA|G|290
9BUP|1|AA|A|291
9BUP|1|AA|U|292
9BUP|1|AA|U|293
9BUP|1|AA|G|294
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13
- Chain AO
- 60S ribosomal protein L27a
- Chain AP
- Ribosomal protein L15
- Chain Ai
- Large ribosomal subunit protein eL42
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