3D structure

PDB id
9BUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAUACAUUUC
Length
10 nucleotides
Bulged bases
9BUP|1|AA|A|312, 9BUP|1|AA|U|313
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9BUP_009 not in the Motif Atlas
Homologous match to HL_8CRE_009
Geometric discrepancy: 0.1946
The information below is about HL_8CRE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77600.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

9BUP|1|AA|G|311
9BUP|1|AA|A|312
9BUP|1|AA|U|313
9BUP|1|AA|A|314
9BUP|1|AA|C|315
9BUP|1|AA|A|316
9BUP|1|AA|U|317
9BUP|1|AA|U|318
9BUP|1|AA|U|319
9BUP|1|AA|C|320

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AL
60S ribosomal protein L13
Chain AO
60S ribosomal protein L27a
Chain AP
Ribosomal protein L15
Chain Ab
60S ribosomal protein L36
Chain Ai
Large ribosomal subunit protein eL42

Coloring options:


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