HL_9BUP_014

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUUUUCU

Length

8 nucleotides

Bulged bases

9BUP|1|AA|U|665, 9BUP|1|AA|U|668, 9BUP|1|AA|C|669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_014 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3069

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9BUP|1|AA|A|663
9BUP|1|AA|U|664
9BUP|1|AA|U|665
9BUP|1|AA|U|666
9BUP|1|AA|U|667
9BUP|1|AA|U|668
9BUP|1|AA|C|669
9BUP|1|AA|U|670

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L4

Chain AI

60S ribosomal protein L6