HL_9BUP_019

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9BUP|1|AA|U|998, 9BUP|1|AA|A|1002, 9BUP|1|AA|A|1003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_019 not in the Motif Atlas

Homologous match to HL_8CRE_019

Geometric discrepancy: 0.1184

The information below is about HL_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

9BUP|1|AA|A|995
9BUP|1|AA|C|996
9BUP|1|AA|G|997
9BUP|1|AA|U|998
9BUP|1|AA|G|999
9BUP|1|AA|C|1000
9BUP|1|AA|A|1001
9BUP|1|AA|A|1002
9BUP|1|AA|A|1003
9BUP|1|AA|U|1004

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AW

60S ribosomal protein L17

Chain Ac

Ribosomal protein L37