HL_9BUP_022
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUCAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 9BUP|1|AA|U|1205, 9BUP|1|AA|U|1206
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_022 not in the Motif Atlas
- Homologous match to HL_8CRE_023
- Geometric discrepancy: 0.1582
- The information below is about HL_8CRE_023
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_77436.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
9BUP|1|AA|C|1200
9BUP|1|AA|U|1201
9BUP|1|AA|C|1202
9BUP|1|AA|A|1203
9BUP|1|AA|A|1204
9BUP|1|AA|U|1205
9BUP|1|AA|U|1206
9BUP|1|AA|U|1207
9BUP|1|AA|G|1208
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 60S ribosomal protein L29
- Chain AR
- 60S ribosomal protein L5
- Chain AV
- 60S ribosomal protein L21
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