HL_9BUP_023

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

9BUP|1|AA|G|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_023 not in the Motif Atlas

Homologous match to HL_8CRE_024

Geometric discrepancy: 0.0691

The information below is about HL_8CRE_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9BUP|1|AA|G|1254
9BUP|1|AA|G|1255
9BUP|1|AA|U|1256
9BUP|1|AA|A|1257
9BUP|1|AA|A|1258
9BUP|1|AA|G|1259
9BUP|1|AA|C|1260

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein L10