HL_9BUP_025

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_025 not in the Motif Atlas

Homologous match to HL_8CRE_029

Geometric discrepancy: 0.1055

The information below is about HL_8CRE_029

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9BUP|1|AA|C|1551
9BUP|1|AA|G|1552
9BUP|1|AA|U|1553
9BUP|1|AA|G|1554
9BUP|1|AA|A|1555
9BUP|1|AA|G|1556

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A2

60S ribosomal protein L28

Chain A8

60S ribosomal protein L32