HL_9BUP_028

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_028 not in the Motif Atlas

Homologous match to HL_8CRE_032

Geometric discrepancy: 0.3953

The information below is about HL_8CRE_032

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9BUP|1|AA|U|1693
9BUP|1|AA|G|1694
9BUP|1|AA|A|1695
9BUP|1|AA|A|1696
9BUP|1|AA|A|1697
9BUP|1|AA|A|1698

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AP

Ribosomal protein L15

Chain Ac

Ribosomal protein L37