HL_9BUP_029

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

9BUP|1|AA|U|1749, 9BUP|1|AA|U|1750

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_029 not in the Motif Atlas

Homologous match to HL_8CRE_034

Geometric discrepancy: 0.1012

The information below is about HL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BUP|1|AA|G|1742
9BUP|1|AA|U|1743
9BUP|1|AA|U|1744
9BUP|1|AA|G|1745
9BUP|1|AA|A|1746
9BUP|1|AA|U|1747
9BUP|1|AA|A|1748
9BUP|1|AA|U|1749
9BUP|1|AA|U|1750
9BUP|1|AA|C|1751

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19

Chain AY

60S ribosomal protein L23

Chain Aa

60S ribosomal protein L34

Chain Ae

60S ribosomal protein L39