HL_9BUP_032

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUUACU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_032 not in the Motif Atlas

Homologous match to HL_8P9A_149

Geometric discrepancy: 0.4457

The information below is about HL_8P9A_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97067.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9BUP|1|AA|A|1876
9BUP|1|AA|U|1877
9BUP|1|AA|U|1878
9BUP|1|AA|U|1879
9BUP|1|AA|A|1880
9BUP|1|AA|C|1881
9BUP|1|AA|U|1882

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19

Chain Ah

Large ribosomal subunit protein eL43