HL_9BUP_033

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

9BUP|1|AA|C|2015, 9BUP|1|AA|U|2016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_033 not in the Motif Atlas

Homologous match to HL_8CRE_039

Geometric discrepancy: 0.081

The information below is about HL_8CRE_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9BUP|1|AA|C|2014
9BUP|1|AA|C|2015
9BUP|1|AA|U|2016
9BUP|1|AA|U|2017
9BUP|1|AA|G|2018

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2

Chain Ah

Large ribosomal subunit protein eL43