HL_9BUP_035

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAACAG

Length

7 nucleotides

Bulged bases

9BUP|1|AA|C|2133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_035 not in the Motif Atlas

Homologous match to HL_8CRE_041

Geometric discrepancy: 0.1017

The information below is about HL_8CRE_041

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9BUP|1|AA|U|2129
9BUP|1|AA|U|2130
9BUP|1|AA|A|2131
9BUP|1|AA|A|2132
9BUP|1|AA|C|2133
9BUP|1|AA|A|2134
9BUP|1|AA|G|2135

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19