HL_9BUP_040

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUGAAAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_040 not in the Motif Atlas

Geometric match to HL_7QR8_003

Geometric discrepancy: 0.1744

The information below is about HL_7QR8_003

Detailed Annotation

GNRA with extra cWH

Broad Annotation

GNRA with extra cWH

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BUP|1|AA|A|2512
9BUP|1|AA|U|2513
9BUP|1|AA|G|2514
9BUP|1|AA|A|2515
9BUP|1|AA|A|2516
9BUP|1|AA|A|2517
9BUP|1|AA|U|2518
9BUP|1|AA|U|2519

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ab

60S ribosomal protein L36

Chain Ai

Large ribosomal subunit protein eL42