HL_9BUP_045

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAAUAUUAACG

Length

13 nucleotides

Bulged bases

9BUP|1|AA|A|2976, 9BUP|1|AA|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_045 not in the Motif Atlas

Homologous match to HL_8CRE_054

Geometric discrepancy: 0.0883

The information below is about HL_8CRE_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9BUP|1|AA|U|2972
9BUP|1|AA|U|2973
9BUP|1|AA|A|2974
9BUP|1|AA|A|2975
9BUP|1|AA|A|2976
9BUP|1|AA|U|2977
9BUP|1|AA|A|2978
9BUP|1|AA|U|2979
9BUP|1|AA|U|2980
9BUP|1|AA|A|2981
9BUP|1|AA|A|2982
9BUP|1|AA|C|2983
9BUP|1|AA|G|2984

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein L29

Chain AQ

60S ribosomal protein L10

Chain AV

60S ribosomal protein L21