HL_9BUP_051
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGCUCCUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_051 not in the Motif Atlas
- Homologous match to HL_8P9A_172
- Geometric discrepancy: 0.1383
- The information below is about HL_8P9A_172
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9BUP|1|AA|C|3199
9BUP|1|AA|G|3200
9BUP|1|AA|C|3201
9BUP|1|AA|U|3202
9BUP|1|AA|C|3203
9BUP|1|AA|C|3204
9BUP|1|AA|U|3205
9BUP|1|AA|A|3206
9BUP|1|AA|G|3207
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L10
- Chain Af
- Ubiquitin-60S ribosomal protein L40
- Chain S9
- Transfer RNA; tRNA
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