HL_9BUP_054

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_054 not in the Motif Atlas

Homologous match to HL_8CRE_063

Geometric discrepancy: 0.0546

The information below is about HL_8CRE_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9BUP|1|AA|C|3322
9BUP|1|AA|G|3323
9BUP|1|AA|U|3324
9BUP|1|AA|G|3325
9BUP|1|AA|A|3326
9BUP|1|AA|G|3327

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2

Chain S8

Transfer RNA; tRNA