HL_9BUP_058

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9BUP|1|AA|U|3698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_058 not in the Motif Atlas

Homologous match to HL_8CRE_069

Geometric discrepancy: 0.0852

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9BUP|1|AA|G|3697
9BUP|1|AA|U|3698
9BUP|1|AA|A|3699
9BUP|1|AA|G|3700
9BUP|1|AA|A|3701
9BUP|1|AA|C|3702
9BUP|1|AA|G|3703
9BUP|1|AA|A|3704
9BUP|1|AA|C|3705

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein L31

Chain AE

60S ribosomal protein L3

Chain AW

60S ribosomal protein L17