HL_9BUP_072
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_072 not in the Motif Atlas
- Homologous match to HL_7U2I_104
- Geometric discrepancy: 0.1608
- The information below is about HL_7U2I_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9BUP|1|S9|A|31
9BUP|1|S9|U|32
9BUP|1|S9|U|33
9BUP|1|S9|G|34
9BUP|1|S9|A|35
9BUP|1|S9|A|36
9BUP|1|S9|A|37
9BUP|1|S9|A|38
9BUP|1|S9|U|39
Current chains
- Chain S9
- tRNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain SA
- Small subunit ribosomal RNA; SSU rRNA
- Chain SQ
- 40S ribosomal protein S23
- Chain mR
- mRNA
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