HL_9BUP_074
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUUGAUCUUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_074 not in the Motif Atlas
- Homologous match to HL_8CRE_191
- Geometric discrepancy: 0.0595
- The information below is about HL_8CRE_191
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.1
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|G|7
9BUP|1|SA|U|8
9BUP|1|SA|U|9
9BUP|1|SA|G|10
9BUP|1|SA|A|11
9BUP|1|SA|U|12
9BUP|1|SA|C|13
9BUP|1|SA|U|14
9BUP|1|SA|U|15
9BUP|1|SA|G|16
9BUP|1|SA|C|17
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SG
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S23
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