HL_9BUP_076

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAGGAAUU

Length

8 nucleotides

Bulged bases

9BUP|1|SA|U|251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_076 not in the Motif Atlas

Homologous match to HL_8CRE_196

Geometric discrepancy: 0.3873

The information below is about HL_8CRE_196

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9BUP|1|SA|A|245
9BUP|1|SA|A|246
9BUP|1|SA|G|247
9BUP|1|SA|G|248
9BUP|1|SA|A|249
9BUP|1|SA|A|250
9BUP|1|SA|U|251
9BUP|1|SA|U|252

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S4

Chain SV

40S ribosomal protein S11