HL_9BUP_082
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUUAAAACCU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_082 not in the Motif Atlas
- Geometric match to HL_7K16_002
- Geometric discrepancy: 0.3731
- The information below is about HL_7K16_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9BUP|1|SA|A|528
9BUP|1|SA|U|529
9BUP|1|SA|U|530
9BUP|1|SA|U|531
9BUP|1|SA|A|532
9BUP|1|SA|A|533
9BUP|1|SA|A|534
9BUP|1|SA|A|535
9BUP|1|SA|C|536
9BUP|1|SA|C|537
9BUP|1|SA|U|538
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S1
- 40S ribosomal protein S24
- Chain SE
- 40S ribosomal protein S9
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