HL_9BUP_085
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_085 not in the Motif Atlas
- Homologous match to HL_8P9A_209
- Geometric discrepancy: 0.1447
- The information below is about HL_8P9A_209
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9BUP|1|SA|A|969
9BUP|1|SA|G|970
9BUP|1|SA|G|971
9BUP|1|SA|U|972
9BUP|1|SA|G|973
9BUP|1|SA|A|974
9BUP|1|SA|A|975
9BUP|1|SA|A|976
9BUP|1|SA|U|977
9BUP|1|SA|U|978
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain S7
- Transfer RNA; tRNA
- Chain SP
- 40S ribosomal protein S11
- Chain mR
- mRNA
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