HL_9BUP_087
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9BUP|1|SA|U|1073
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_087 not in the Motif Atlas
- Homologous match to HL_8CRE_212
- Geometric discrepancy: 0.131
- The information below is about HL_8CRE_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9BUP|1|SA|G|1066
9BUP|1|SA|A|1067
9BUP|1|SA|U|1068
9BUP|1|SA|C|1069
9BUP|1|SA|A|1070
9BUP|1|SA|G|1071
9BUP|1|SA|A|1072
9BUP|1|SA|U|1073
9BUP|1|SA|A|1074
9BUP|1|SA|C|1075
9BUP|1|SA|C|1076
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain S3
- 40S ribosomal protein S26
- Chain S7
- Transfer RNA; tRNA
- Chain S8
- Transfer RNA; tRNA
- Chain SP
- 40S ribosomal protein S11
- Chain mR
- mRNA
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