HL_9BUP_089

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_089 not in the Motif Atlas

Homologous match to HL_8CRE_215

Geometric discrepancy: 0.058

The information below is about HL_8CRE_215

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9BUP|1|SA|C|1222
9BUP|1|SA|G|1223
9BUP|1|SA|C|1224
9BUP|1|SA|A|1225
9BUP|1|SA|A|1226
9BUP|1|SA|G|1227

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ag

60S ribosomal protein L41

Chain Ah

Large ribosomal subunit protein eL43