HL_9BUP_092

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUCUAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_092 not in the Motif Atlas

Homologous match to HL_8CRE_221

Geometric discrepancy: 0.3665

The information below is about HL_8CRE_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

9BUP|1|SA|U|1642
9BUP|1|SA|G|1643
9BUP|1|SA|U|1644
9BUP|1|SA|C|1645
9BUP|1|SA|U|1646
9BUP|1|SA|A|1647
9BUP|1|SA|A|1648

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain S5

40S ribosomal protein S28e

Chain SW

40S ribosomal protein S17