HL_9C3H_006

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9C3H|1|L5|G|135, 9C3H|1|L5|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_006 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2161

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9C3H|1|L5|C|131
9C3H|1|L5|G|132
9C3H|1|L5|C|133
9C3H|1|L5|G|134
9C3H|1|L5|G|135
9C3H|1|L5|C|136
9C3H|1|L5|G|137

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LN

Large ribosomal subunit protein eL15

Chain LO

Large ribosomal subunit protein uL29

Chain LP

Large ribosomal subunit protein eL37