HL_9C3H_009
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- GUGUGAGGC
- Length
- 9 nucleotides
- Bulged bases
- 9C3H|1|L5|G|232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9C3H_009 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.5304
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
9C3H|1|L5|G|230
9C3H|1|L5|U|231
9C3H|1|L5|G|232
9C3H|1|L5|U|233
9C3H|1|L5|G|234
9C3H|1|L5|A|235
9C3H|1|L5|G|236
9C3H|1|L5|G|237
9C3H|1|L5|C|238
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LE
- Large ribosomal subunit protein uL24
Coloring options: