HL_9C3H_025

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

9C3H|1|L5|C|1676, 9C3H|1|L5|A|1679

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_025 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.3186

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

9C3H|1|L5|C|1675
9C3H|1|L5|C|1676
9C3H|1|L5|PSU|1677
9C3H|1|L5|C|1678
9C3H|1|L5|A|1679
9C3H|1|L5|G|1680

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LT

Large ribosomal subunit protein eL21

Chain La

Large ribosomal subunit protein uL15

Chain Lb

Large ribosomal subunit protein eL29

Chain Le

Large ribosomal subunit protein eL42