HL_9C3H_026

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

9C3H|1|L5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_026 not in the Motif Atlas

Geometric match to HL_8P9A_120

Geometric discrepancy: 0.3616

The information below is about HL_8P9A_120

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9C3H|1|L5|C|1816
9C3H|1|L5|U|1817
9C3H|1|L5|G|1818
9C3H|1|L5|G|1819
9C3H|1|L5|C|1820
9C3H|1|L5|G|1821
9C3H|1|L5|U|1822
9C3H|1|L5|G|1823

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

Large ribosomal subunit protein uL18

Chain LT

Large ribosomal subunit protein eL21

Chain Lb

Large ribosomal subunit protein eL29