HL_9C3H_032

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

9C3H|1|L5|G|2421, 9C3H|1|L5|U|2425

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_032 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.193

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9C3H|1|L5|A|2420
9C3H|1|L5|G|2421
9C3H|1|L5|OMC|2422
9C3H|1|L5|A|2423
9C3H|1|L5|OMG|2424
9C3H|1|L5|U|2425
9C3H|1|L5|U|2426

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain LU

Large ribosomal subunit protein eL39

Chain Lh

Large ribosomal subunit protein uL22

Chain NC

Nascent chain